Jake Smith

Senior Researcher

Publications

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- Sulfonated Benzo[c]cinnolines for Alkaline Redox-Flow Batteries
  
  Siddhant Singh, Jessica L. Tami, Cameron Gruich, Allison J. Gatz, Jason Dong, Bichlien Nguyen, Jake Smith, Bryan R. Goldsmith, Anne J. McNeil, David G. Kwabi
  
  ACS Applied Energy Materials | June 2025
  
  Publication
- A generative model for inorganic materials design
  
  Claudio Zeni, Robert Pinsler, Daniel Zügner, Andrew Fowler, Matthew Horton, Xiang Fu, Zilong Wang, Aliaksandra Shysheya, Jonathan Crabbé, Shoko Ueda, Roberto Sordillo, Lixin Sun, Jake Smith, Bichlien Nguyen, Hannes Schulz, Sarah Lewis, Chin-Wei Huang, Ziheng Lu, Yichi Zhou, Han Yang, Hongxia Hao, Jielan Li, Chunlei Yang, Wenjie Li, Ryota Tomioka, Tian Xie
  
  Nature | January 2025
  
  Publication
- Inverse Design of Vitrimeric Polymers by Molecular Dynamics and Generative Modeling
  
  Yiwen Zheng, Prakash Thakolkaran, Jake Smith, Ziheng Lu, Shuxin Zheng, Bichlien Nguyen, Siddhant Kumar, Aniruddh Vashisth
  
  Advanced Science | December 2024
  
  DOI Publication Project
- Evaluating the risk of data loss due to particle radiation damage in a DNA data storage system
  
  Christopher N. Takahashi, David P. Ward, Carlo Cazzaniga, Christopher D. Frost, Paolo Rech, Kumkum Ganguly, Sean Blanchard, Steve Wender, Bichlien Nguyen, Jake Smith
  
  Nature Communications | September 2024, Vol 15: pp. 8067
  
  DOI Publication Publication Project
- MatterSim: A Deep Learning Atomistic Model Across Elements, Temperatures and Pressures
  
  Han Yang, Chenxi Hu, Yichi Zhou, Xixian Liu, Yu Shi, Jielan Li, Guanzhi Li, Zekun Chen, Shuizhou Chen, Claudio Zeni, Matthew Horton, Robert Pinsler, Andrew Fowler, Daniel Zügner, Tianyidan Xie, Jake Smith, Lixin Sun, Qian Wang, Lingyu Kong, Chang Liu, Hongxia Hao, Ziheng Lu
  
  May 2024
  
  Publication Download
- Recyclable vitrimer-based printed circuit boards for sustainable electronics
  
  Zhihan Zhang, Agni K. Biswal, Ankush Nandi, Kali Frost, Jake Smith, Bichlien Nguyen, Shwetak Patel, Aniruddh Vashisth, Vikram Iyer
  
  Nature Sustainability | April 2024
  
  Publication Project
- MatterGen: a generative model for inorganic materials design
  
  Claudio Zeni, Robert Pinsler, Daniel Zügner, Andrew Fowler, Matthew Horton, Xiang Fu, Sasha Shysheya, Jonathan Crabbé, Lixin Sun, Jake Smith, Ryota Tomioka, Tian Xie
  
  December 2023
  
  PDF Publication Video Video Video Github
- MOFDiff: Coarse-grained Diffusion for Metal-Organic Framework Design
  
  Xiang Fu, Tian Xie, Andrew S. Rosen, Tommi Jaakkola, Jake Smith
  
  ICLR 2024 | October 2023
  
  Publication Github
- What are the Desired Characteristics of Calibration Sets? Identifying Correlates on Long Form Scientific Summarization
  
  Griffin Adams, Bichlien Nguyen, Jake Smith, Yingce Xia, Shufang Xie, Anna Ostropolets, Budhaditya Deb, Yuan-Jyue Chen, Tristan Naumann, Noémie Elhadad
  
  ACL 2023 | July 2023
  
  Publication
- Spatially Selective Electrochemical Cleavage of a Polymerase-Nucleotide Conjugate
  
  Jake Smith, Bichlien Nguyen, Rob Carlson, Jeffrey G. Bertram, Sebastian Palluk, Daniel H. Arlow, Karin Strauss
  
  ACS Synthetic Biology | May 2023
  
  Publication Project
- Scaling DNA data storage with nanoscale electrode wells
  
  Bichlien Nguyen, Christopher Takahashi, Gagan Gupta, Jake Smith, Richard Rouse, Paul Berndt, Sergey Yekhanin, David Ward, Siena Ang, Patrick Garvan, Hsing-Yeh Parker, Rob Carlson, Douglas Carmean, Luis Ceze, Karin Strauss
  
  Science Advances | November 2021
  
  Publication Project
- Architecting Datacenters for Sustainability: Greener Data Storage using Synthetic DNA
  
  Bichlien Nguyen, Julie Sinistore, Jake Smith, Praneet S. Arshi, Lauren M. Johnson, Tim Kidman, T.J. diCaprio, Doug Carmean, Karin Strauss
  
  Electronics Goes Green 2020 | September 2020
  
  Publication Project

- Sulfonated Benzo[c]cinnolines for Alkaline Redox-Flow Batteries
  
  Siddhant Singh, Jessica L. Tami, Cameron Gruich, Allison J. Gatz, Jason Dong, Bichlien Nguyen, Jake Smith, Bryan R. Goldsmith, Anne J. McNeil, David G. Kwabi
  
  ACS Applied Energy Materials | June 2025
  
  Publication
- Evaluating the risk of data loss due to particle radiation damage in a DNA data storage system
  
  Christopher N. Takahashi, David P. Ward, Carlo Cazzaniga, Christopher D. Frost, Paolo Rech, Kumkum Ganguly, Sean Blanchard, Steve Wender, Bichlien Nguyen, Jake Smith
  
  Nature Communications | September 2024, Vol 15: pp. 8067
  
  DOI Publication Publication Project
- Recyclable vitrimer-based printed circuit boards for sustainable electronics
  
  Zhihan Zhang, Agni K. Biswal, Ankush Nandi, Kali Frost, Jake Smith, Bichlien Nguyen, Shwetak Patel, Aniruddh Vashisth, Vikram Iyer
  
  Nature Sustainability | April 2024
  
  Publication Project
- Spatially Selective Electrochemical Cleavage of a Polymerase-Nucleotide Conjugate
  
  Jake Smith, Bichlien Nguyen, Rob Carlson, Jeffrey G. Bertram, Sebastian Palluk, Daniel H. Arlow, Karin Strauss
  
  ACS Synthetic Biology | May 2023
  
  Publication Project
- Scaling DNA data storage with nanoscale electrode wells
  
  Bichlien Nguyen, Christopher Takahashi, Gagan Gupta, Jake Smith, Richard Rouse, Paul Berndt, Sergey Yekhanin, David Ward, Siena Ang, Patrick Garvan, Hsing-Yeh Parker, Rob Carlson, Douglas Carmean, Luis Ceze, Karin Strauss
  
  Science Advances | November 2021
  
  Publication Project
- Architecting Datacenters for Sustainability: Greener Data Storage using Synthetic DNA
  
  Bichlien Nguyen, Julie Sinistore, Jake Smith, Praneet S. Arshi, Lauren M. Johnson, Tim Kidman, T.J. diCaprio, Doug Carmean, Karin Strauss
  
  Electronics Goes Green 2020 | September 2020
  
  Publication Project
- Sulfonated Benzo[c]cinnolines for Alkaline Redox-Flow Batteries
  
  Siddhant Singh, Jessica L. Tami, Cameron Gruich, Allison J. Gatz, Jason Dong, Bichlien Nguyen, Jake Smith, Bryan R. Goldsmith, Anne J. McNeil, David G. Kwabi
  
  ACS Applied Energy Materials | June 2025
  
  Publication
- Evaluating the risk of data loss due to particle radiation damage in a DNA data storage system
  
  Christopher N. Takahashi, David P. Ward, Carlo Cazzaniga, Christopher D. Frost, Paolo Rech, Kumkum Ganguly, Sean Blanchard, Steve Wender, Bichlien Nguyen, Jake Smith
  
  Nature Communications | September 2024, Vol 15: pp. 8067
  
  DOI Publication Publication Project
- Recyclable vitrimer-based printed circuit boards for sustainable electronics
  
  Zhihan Zhang, Agni K. Biswal, Ankush Nandi, Kali Frost, Jake Smith, Bichlien Nguyen, Shwetak Patel, Aniruddh Vashisth, Vikram Iyer
  
  Nature Sustainability | April 2024
  
  Publication Project
- Scaling DNA data storage with nanoscale electrode wells
  
  Bichlien Nguyen, Christopher Takahashi, Gagan Gupta, Jake Smith, Richard Rouse, Paul Berndt, Sergey Yekhanin, David Ward, Siena Ang, Patrick Garvan, Hsing-Yeh Parker, Rob Carlson, Douglas Carmean, Luis Ceze, Karin Strauss
  
  Science Advances | November 2021
  
  Publication Project
- A generative model for inorganic materials design
  
  Claudio Zeni, Robert Pinsler, Daniel Zügner, Andrew Fowler, Matthew Horton, Xiang Fu, Zilong Wang, Aliaksandra Shysheya, Jonathan Crabbé, Shoko Ueda, Roberto Sordillo, Lixin Sun, Jake Smith, Bichlien Nguyen, Hannes Schulz, Sarah Lewis, Chin-Wei Huang, Ziheng Lu, Yichi Zhou, Han Yang, Hongxia Hao, Jielan Li, Chunlei Yang, Wenjie Li, Ryota Tomioka, Tian Xie
  
  Nature | January 2025
  
  Publication
- Inverse Design of Vitrimeric Polymers by Molecular Dynamics and Generative Modeling
  
  Yiwen Zheng, Prakash Thakolkaran, Jake Smith, Ziheng Lu, Shuxin Zheng, Bichlien Nguyen, Siddhant Kumar, Aniruddh Vashisth
  
  Advanced Science | December 2024
  
  DOI Publication Project
- MatterSim: A Deep Learning Atomistic Model Across Elements, Temperatures and Pressures
  
  Han Yang, Chenxi Hu, Yichi Zhou, Xixian Liu, Yu Shi, Jielan Li, Guanzhi Li, Zekun Chen, Shuizhou Chen, Claudio Zeni, Matthew Horton, Robert Pinsler, Andrew Fowler, Daniel Zügner, Tianyidan Xie, Jake Smith, Lixin Sun, Qian Wang, Lingyu Kong, Chang Liu, Hongxia Hao, Ziheng Lu
  
  May 2024
  
  Publication Download
- MatterGen: a generative model for inorganic materials design
  
  Claudio Zeni, Robert Pinsler, Daniel Zügner, Andrew Fowler, Matthew Horton, Xiang Fu, Sasha Shysheya, Jonathan Crabbé, Lixin Sun, Jake Smith, Ryota Tomioka, Tian Xie
  
  December 2023
  
  PDF Publication Video Video Video Github
- MOFDiff: Coarse-grained Diffusion for Metal-Organic Framework Design
  
  Xiang Fu, Tian Xie, Andrew S. Rosen, Tommi Jaakkola, Jake Smith
  
  ICLR 2024 | October 2023
  
  Publication Github
- A generative model for inorganic materials design
  
  Claudio Zeni, Robert Pinsler, Daniel Zügner, Andrew Fowler, Matthew Horton, Xiang Fu, Zilong Wang, Aliaksandra Shysheya, Jonathan Crabbé, Shoko Ueda, Roberto Sordillo, Lixin Sun, Jake Smith, Bichlien Nguyen, Hannes Schulz, Sarah Lewis, Chin-Wei Huang, Ziheng Lu, Yichi Zhou, Han Yang, Hongxia Hao, Jielan Li, Chunlei Yang, Wenjie Li, Ryota Tomioka, Tian Xie
  
  Nature | January 2025
  
  Publication
- What are the Desired Characteristics of Calibration Sets? Identifying Correlates on Long Form Scientific Summarization
  
  Griffin Adams, Bichlien Nguyen, Jake Smith, Yingce Xia, Shufang Xie, Anna Ostropolets, Budhaditya Deb, Yuan-Jyue Chen, Tristan Naumann, Noémie Elhadad
  
  ACL 2023 | July 2023
  
  Publication
- Evaluating the risk of data loss due to particle radiation damage in a DNA data storage system
  
  Christopher N. Takahashi, David P. Ward, Carlo Cazzaniga, Christopher D. Frost, Paolo Rech, Kumkum Ganguly, Sean Blanchard, Steve Wender, Bichlien Nguyen, Jake Smith
  
  Nature Communications | September 2024, Vol 15: pp. 8067
  
  DOI Publication Publication Project
- Spatially Selective Electrochemical Cleavage of a Polymerase-Nucleotide Conjugate
  
  Jake Smith, Bichlien Nguyen, Rob Carlson, Jeffrey G. Bertram, Sebastian Palluk, Daniel H. Arlow, Karin Strauss
  
  ACS Synthetic Biology | May 2023
  
  Publication Project
- Inverse Design of Vitrimeric Polymers by Molecular Dynamics and Generative Modeling
  
  Yiwen Zheng, Prakash Thakolkaran, Jake Smith, Ziheng Lu, Shuxin Zheng, Bichlien Nguyen, Siddhant Kumar, Aniruddh Vashisth
  
  Advanced Science | December 2024
  
  DOI Publication Project
- Architecting Datacenters for Sustainability: Greener Data Storage using Synthetic DNA
  
  Bichlien Nguyen, Julie Sinistore, Jake Smith, Praneet S. Arshi, Lauren M. Johnson, Tim Kidman, T.J. diCaprio, Doug Carmean, Karin Strauss
  
  Electronics Goes Green 2020 | September 2020
  
  Publication Project
- What are the Desired Characteristics of Calibration Sets? Identifying Correlates on Long Form Scientific Summarization
  
  Griffin Adams, Bichlien Nguyen, Jake Smith, Yingce Xia, Shufang Xie, Anna Ostropolets, Budhaditya Deb, Yuan-Jyue Chen, Tristan Naumann, Noémie Elhadad
  
  ACL 2023 | July 2023
  
  Publication
- Scaling DNA data storage with nanoscale electrode wells
  
  Bichlien Nguyen, Christopher Takahashi, Gagan Gupta, Jake Smith, Richard Rouse, Paul Berndt, Sergey Yekhanin, David Ward, Siena Ang, Patrick Garvan, Hsing-Yeh Parker, Rob Carlson, Douglas Carmean, Luis Ceze, Karin Strauss
  
  Science Advances | November 2021
  
  Publication Project
- Architecting Datacenters for Sustainability: Greener Data Storage using Synthetic DNA
  
  Bichlien Nguyen, Julie Sinistore, Jake Smith, Praneet S. Arshi, Lauren M. Johnson, Tim Kidman, T.J. diCaprio, Doug Carmean, Karin Strauss
  
  Electronics Goes Green 2020 | September 2020
  
  Publication Project

- Sulfonated Benzo[c]cinnolines for Alkaline Redox-Flow Batteries
  
  Siddhant Singh, Jessica L. Tami, Cameron Gruich, Allison J. Gatz, Jason Dong, Bichlien Nguyen, Jake Smith, Bryan R. Goldsmith, Anne J. McNeil, David G. Kwabi
  
  ACS Applied Energy Materials | June 2025
  
  Publication
- A generative model for inorganic materials design
  
  Claudio Zeni, Robert Pinsler, Daniel Zügner, Andrew Fowler, Matthew Horton, Xiang Fu, Zilong Wang, Aliaksandra Shysheya, Jonathan Crabbé, Shoko Ueda, Roberto Sordillo, Lixin Sun, Jake Smith, Bichlien Nguyen, Hannes Schulz, Sarah Lewis, Chin-Wei Huang, Ziheng Lu, Yichi Zhou, Han Yang, Hongxia Hao, Jielan Li, Chunlei Yang, Wenjie Li, Ryota Tomioka, Tian Xie
  
  Nature | January 2025
  
  Publication
- Inverse Design of Vitrimeric Polymers by Molecular Dynamics and Generative Modeling
  
  Yiwen Zheng, Prakash Thakolkaran, Jake Smith, Ziheng Lu, Shuxin Zheng, Bichlien Nguyen, Siddhant Kumar, Aniruddh Vashisth
  
  Advanced Science | December 2024
  
  DOI Publication Project
- Evaluating the risk of data loss due to particle radiation damage in a DNA data storage system
  
  Christopher N. Takahashi, David P. Ward, Carlo Cazzaniga, Christopher D. Frost, Paolo Rech, Kumkum Ganguly, Sean Blanchard, Steve Wender, Bichlien Nguyen, Jake Smith
  
  Nature Communications | September 2024, Vol 15: pp. 8067
  
  DOI Publication Publication Project
- Recyclable vitrimer-based printed circuit boards for sustainable electronics
  
  Zhihan Zhang, Agni K. Biswal, Ankush Nandi, Kali Frost, Jake Smith, Bichlien Nguyen, Shwetak Patel, Aniruddh Vashisth, Vikram Iyer
  
  Nature Sustainability | April 2024
  
  Publication Project
- Spatially Selective Electrochemical Cleavage of a Polymerase-Nucleotide Conjugate
  
  Jake Smith, Bichlien Nguyen, Rob Carlson, Jeffrey G. Bertram, Sebastian Palluk, Daniel H. Arlow, Karin Strauss
  
  ACS Synthetic Biology | May 2023
  
  Publication Project
- Scaling DNA data storage with nanoscale electrode wells
  
  Bichlien Nguyen, Christopher Takahashi, Gagan Gupta, Jake Smith, Richard Rouse, Paul Berndt, Sergey Yekhanin, David Ward, Siena Ang, Patrick Garvan, Hsing-Yeh Parker, Rob Carlson, Douglas Carmean, Luis Ceze, Karin Strauss
  
  Science Advances | November 2021
  
  Publication Project
- MatterSim: A Deep Learning Atomistic Model Across Elements, Temperatures and Pressures
  
  Han Yang, Chenxi Hu, Yichi Zhou, Xixian Liu, Yu Shi, Jielan Li, Guanzhi Li, Zekun Chen, Shuizhou Chen, Claudio Zeni, Matthew Horton, Robert Pinsler, Andrew Fowler, Daniel Zügner, Tianyidan Xie, Jake Smith, Lixin Sun, Qian Wang, Lingyu Kong, Chang Liu, Hongxia Hao, Ziheng Lu
  
  May 2024
  
  Publication Download
- MatterGen: a generative model for inorganic materials design
  
  Claudio Zeni, Robert Pinsler, Daniel Zügner, Andrew Fowler, Matthew Horton, Xiang Fu, Sasha Shysheya, Jonathan Crabbé, Lixin Sun, Jake Smith, Ryota Tomioka, Tian Xie
  
  December 2023
  
  PDF Publication Video Video Video Github
- MOFDiff: Coarse-grained Diffusion for Metal-Organic Framework Design
  
  Xiang Fu, Tian Xie, Andrew S. Rosen, Tommi Jaakkola, Jake Smith
  
  ICLR 2024 | October 2023
  
  Publication Github
- What are the Desired Characteristics of Calibration Sets? Identifying Correlates on Long Form Scientific Summarization
  
  Griffin Adams, Bichlien Nguyen, Jake Smith, Yingce Xia, Shufang Xie, Anna Ostropolets, Budhaditya Deb, Yuan-Jyue Chen, Tristan Naumann, Noémie Elhadad
  
  ACL 2023 | July 2023
  
  Publication
- Architecting Datacenters for Sustainability: Greener Data Storage using Synthetic DNA
  
  Bichlien Nguyen, Julie Sinistore, Jake Smith, Praneet S. Arshi, Lauren M. Johnson, Tim Kidman, T.J. diCaprio, Doug Carmean, Karin Strauss
  
  Electronics Goes Green 2020 | September 2020
  
  Publication Project